Berkeley Drosophila Genome Project
BDGP Resources
Download Miscellaneous Drosophila Sequences
| Description | Last updated | Database (via http) | Compressed version (via ftp) |
|---|---|---|---|
| All Fly Sequences | |||
| All Drosophila sequences (Release 1 data, not Release 2) | 8-Apr-2004 | na_all.dmel | na_all.dmel.Z |
| Fly Genes from Public Databases | |||
| Drosophila sequences from GenBank (minus BDGP, EDGP, and dbEST sequences) | 12-Jul-2004 | na_gb.dmel | na_gb.dmel.Z |
| Drosophila dbEST sequences including BDGP from same strain as genomic sequence | 10-Jul-2004 | na_dbEST.same.dmel | na_dbEST.same.dmel.Z |
| Drosophila dbEST sequences including BDGP from different strain from genomic sequence | 10-Jul-2004 | na_dbEST.diff.dmel | na_dbEST.diff.dmel.Z |
| SPTRreal | |||
| Drosophila -- Whitfield (November 2003) Note: in EMBL format, not FASTA format |
November 2003 | aa_shypo.dmel.embl | aa_shypo.dmel.embl.Z |
| Drosophila -- Whitfield (June 2002) Note: in EMBL format, not FASTA format |
June 2002 | aa_shypo.dros.embl.06-20-2002 | aa_shypo.dros.embl.06-20-2002.Z |
| Drosophila -- Whitfield (November 2003) Note: in EMBL format, not FASTA format |
November 2003 | aa_sreal.dmel.embl | aa_sreal.dmel.embl.Z |
| Drosophila -- Whitfield (June 2002) Note: in EMBL format, not FASTA format |
June 2002 | aa_sreal.dros.embl.06-20-2002 | aa_sreal.dros.embl.06-20-2002.Z |
| Drosophila -- Whitfield (November 2003) Note: in EMBL format, not FASTA format |
November 2003 | aa_thypo.dmel.embl | aa_thypo.dmel.embl.Z |
| Drosophila -- Whitfield (June 2002) Note: in EMBL format, not FASTA format |
June 2002 | aa_thypo.dros.embl.06-20-2002 | aa_thypo.dros.embl.06-20-2002.Z |
| Drosophila -- Whitfield (November 2003) Note: in EMBL format, not FASTA format |
November 2003 | aa_treal.genome.dmel.embl | aa_treal.genome.dmel.embl.Z |
| Drosophila -- Whitfield (June 2002) Note: in EMBL format, not FASTA format |
June 2002 | aa_treal.genome.dros.embl.06-20-2002 | aa_treal.genome.dros.embl.06-20-2002.Z |
| Drosophila -- Whitfield (November 2003) Note: in EMBL format, not FASTA format |
November 2003 | aa_treal.real.dmel.embl | aa_treal.real.dmel.embl.Z |
| Drosophila -- Whitfield (June 2002) Note: in EMBL format, not FASTA format |
June 2002 | aa_treal.real.dros.embl.06-20-2002 | aa_treal.real.dros.embl.06-20-2002.Z |
| Repeats | |||
| Drosophila Repetitive sequences -- Ashburner, Benos, & Liao | 21-Mar-2002 | na_re.dros | na_re.dros.Z |
| Drosophila transposable element sequences | Please see Natural Transposable Elements in Release 3 Sequence | ||
| Genomic Survey Sequence | |||
| Drosophila P element insertion site sequences from BDGP | 15-Mar-2002 | na_pe.dros | na_pe.dros.Z |
| Drosophila STSs from BDGP and EDGP | 21-Mar-2002 | na_STS.dros | na_STS.dros.Z |
| Genomic Clones | |||
| BDGP/EDGP Genomic Clone Sequence | 20-Mar-2003 | na_geno_clones.dros | na_geno_clones.dros.Z |